HsaALTA0008938-2/5 @ hg38
Alternative 3'ss
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]
Coordinates
chr1:211356367-211360076:+
Coord C1 exon
chr1:211356367-211356468
Coord A exon
chr1:211359912-211359947
Coord C2 exon
chr1:211359948-211360076
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCTGTTGTTATCTGTTGCAGGAT
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG
Seq A exon
GATCACCTTCAGCAGTGCTTATTTCAACCTGTGCAG
Seq C2 exon
TGTTCTAATGAGAAGTGCCGGGAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCATCCTGTCAGTTTCGAAAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512-17-15,17-14,17-13,17-12,17-11-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059116=DUF869=PU(8.0=38.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAATGCTCCTGGATGTA
R:
CGAAACTGACAGGATGCACTCA
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains