HsaALTA0009149-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133302792-133309156:-
Coord C1 exon
chr10:133308823-133309156
Coord A exon
chr10:133302981-133303016
Coord C2 exon
chr10:133302792-133302980
Length
36 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AATGTTTTTTATTTCTACAGTTT
3' ss Score
8.39
Exon sequences
Seq C1 exon
CTCGCCGCCGTAGGCCCCACTGGATCCTACAACTACTTTTTCCCTCTTTTGCTCACGCACCTCGAAGAACTGGTGCTCCCGCGGGAAGCGCACGGGGCGCGCAACGAAGCGAAAGGGCGCGGCCCCAGCCGCGGGATCCCGCTCTACAGGCAGCGGCTCCGCCGCCCCGGGCCCCGCAGCGAGGCGGGCGCACAGCGCGGGGGGCAACTGCATCACCCCGGGCGCGGGCGGGCGCAGCCTGTCGGCCACCGTCCGCGAGCCGAGCCGGACGTGACGTCACGCTCACTTCCGCCGCCGTCGGGGGCTGCGCGGGGGCTGTGGCTCCGGGACTGCG
Seq A exon
TTTGAATTTTATGAATAGCTGTCTTCTTACCTATAG
Seq C2 exon
GAGAACATATTGTGATGTTCGTGCCTCAGAGCTAAAACTATGAGTGAATTTCGGATTCACCATGACGTCAATGAACTGCTTAGCCTGCTGCGTGTCCACGGAGGAGATGGGGCTGAGGTCTACATTGACCTGCTTCAAAAGAACAGGACCCCGTACGTCACTACCACTGTCTCTGCTCACAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-3-9,3-8,3-7,3-6-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGCTCACTTCCGCC
R:
GACGTCATGGTGAATCCGAAA
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains