HsaALTA0009207-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49847959-49848265:-
Coord C1 exon
chr3:49848185-49848265
Coord A exon
NA
Coord C2 exon
chr3:49847959-49847965
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AGCCGTCAGTTCCTCTTCAGGTC
3' ss Score
5.23
Exon sequences
Seq C1 exon
AGAGGCAGCCGCTATGATGGGCAAATTGCAGTGTTTGGGGCTGGTTTTCAGGAGAAACTGAGACGCCAGCACTACCTCCTG
Seq A exon
NA
Seq C2 exon
GTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-13-17,13-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PD(0.1=0.0),PF0089916=ThiF=PU(4.2=22.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)