HsaALTA0009309-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000183696 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:12576]
Coordinates
chr7:48128809-48129961:+
Coord C1 exon
chr7:48128809-48129015
Coord A exon
chr7:48129785-48129846
Coord C2 exon
chr7:48129847-48129961
Length
62 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCTGTTCTTGGACCTGGCAGGGC
3' ss Score
5.78
Exon sequences
Seq C1 exon
GGCGGGGCCGCTCGCAGACTCCATATGAGATTCACCTCGCAGGTGGTTCCCTCATTCGAGTGCTCCGGCGCACAGACCCGCGCCCCGCCGTCTGCGAGCCTCCCGAGAGCCGTCCCTTCGTCCGGCCCTGGAGCATTGCGTTTGTCGCCGGTGTCGCAGTGCGAGGATGGCGCCGCGGGTGTAGCGGCTCTCTGCGCAGGCCGAGTG
Seq A exon
GGCCCAGAGAAGCGAGGAACTCCGCAGCTCGTCGACACGTCTCGTCTCCTGTCCCAATTCAG
Seq C2 exon
GGCTTGGTGAGGTGACTCGCGGTCGCGGGTGACTCGCCGGCAGGACACTGCCTGGAACGCCTGGAGCGCCTCCCACTGCAGACGTCTGTCCGCCTCCAGCCGCTCTCCTCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183696-2-13,2-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGCATTGCGTTTGTC
R:
CGTTCCAGGCAGTGTCCTG
Band lengths:
141-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)