HsaALTA0009318-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000167118 | URM1
Description
ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:HGNC:28378]
Coordinates
chr9:128371319-128378106:+
Coord C1 exon
chr9:128371319-128371415
Coord A exon
chr9:128377995-128378035
Coord C2 exon
chr9:128378036-128378106
Length
41 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTACCTCTTCCTATTTGCAGGAG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CCGGAAATTTGCGGGCGCGCCGGAAGTTGAGGGGAGTTTCCTGCGAGCTCGGCTTCCTCAACATGGCTGCGCCCTTGTCAGTGGAGGTGGAGTTCGG
Seq A exon
GAGCTCACCTGGCTGTCTTTTTCTCTGGTCCTCCTTTGCAG
Seq C2 exon
AGGTGGTGCGGAGCTCCTGTTTGACGGTATTAAGAAACATCGAGTCACTTTGCCTGGACAGGAGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167118-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(20.0=50.0)
A:
NA
C2:
PF091386=Urm1=PD(76.7=92.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTTGAGGGGAGTTTCC
R:
CCTGTCCAGGCAAAGTGACTC
Band lengths:
139-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development