HsaALTA0009617-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:4930]
Coordinates
chr1:6647265-6647692:+
Coord C1 exon
chr1:6647265-6647351
Coord A exon
NA
Coord C2 exon
chr1:6647575-6647692
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GTGCTTCCTGTCTCGGACAGAGC
3' ss Score
7.54
Exon sequences
Seq C1 exon
TGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAACTTCATGGAGCCCCCAAGCCCCATGCA
Seq A exon
NA
Seq C2 exon
AGCTGCAGCTGCATGAAGCTTTCAAGCACCGTGGTGAGAAGCTGTTTGTGTGTGAGGAGTGTGGGCACCGGGCCTCGAGCCGGAATGGCCTGCAGATGCACATCAAGGCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859-8-11,8-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTTGCAGAGCCACATG
R:
CCCACACTCCTCACACACAAA
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)