HsaALTA0009653-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:19159]
Coordinates
chr9:131483700-131484096:-
Coord C1 exon
chr9:131483930-131484096
Coord A exon
chr9:131483760-131483781
Coord C2 exon
chr9:131483700-131483759
Length
22 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCCTGTCCCCTGCACCGCAGGTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CAGCCCCTGAGGGCTCGGCACTGCCGTGAGTGCCGCCGTTGCGTCCGCCGCTACGACCACCACTGCCCCTGGATGGAGAACTGTGTGGGAGAGCGCAACCACCCACTCTTTGTGGTCTACCTGGCGCTGCAGCTGGTGGTGCTTCTGTGGGGCCTGTACCTGGCATG
Seq A exon
GTCAGGCCTCCGGTTCTTCCAG
Seq C2 exon
CCCTGGGGTCAGTGGTTGCGGTCCAGCGGGCTCCTGTTCGCCACCTTCCTGCTGCTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446-5-6,5-5,5-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(39.6=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(35.4=52.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGTGGTCTACCTGGCG
R:
AGGAAGGTGGCGAACAGGAG
Band lengths:
112-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)