HsaALTA0009667-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr3:113958363-113961314:+
Coord C1 exon
chr3:113958363-113958538
Coord A exon
NA
Coord C2 exon
chr3:113961052-113961314
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
3' ss Seq
TAGGCCTTGGTTCTCTCCAGGGG
3' ss Score
6.45
Exon sequences
Seq C1 exon
CTCGGCTCTGTCCTTCACCTGCGTGTGGTACTCTGTGATCATCACAGCAGGCATGGCCTACATCTTCCTGATCCAGCTGATCAACATCAGCTACAATGTGACTGAGCGGGAAGTCCAGCAGGCCCTCCGACAGAAGACTGGGCGCCGGCTCCTCTGCGGGCTCATCGTGGACACAG
Seq A exon
NA
Seq C2 exon
GGGCCAGATGAGTTTATTGTGGAATCTTTGAAAGGACAAGGCCTCTGTGAATGAATCAGTCCCAGGGAAGCATTTGGTGGTGGCGGCAGTGGAGGATTGCCCGGTGAACCTATAAATCAGCAGTCTCTTGGGCAGAGGAGCAAGCCCCTCGAACATGATTTCAAACAAGCAGGTCCTCTTCTCTCATCTCACGTCCTTAGTCTCTGTTAATGAACATACTGGATGTGGAGTTTAATAAATTACCTACTATCATCTGGCCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-9-17,9-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PD(20.9=73.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCTGCGTGTGGTACTC
R:
TGAGAGAAGAGGACCTGCTTGT
Band lengths:
350-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development