HsaALTA0009681-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184517 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr16:75152909-75166892:+
Coord C1 exon
chr16:75152909-75152966
Coord A exon
NA
Coord C2 exon
chr16:75166770-75166892
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATAACAATATGCCATTTCAGGGA
3' ss Score
5.88
Exon sequences
Seq C1 exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
Seq A exon
NA
Seq C2 exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAGGAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517-8-8,8-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTGCCTTTGCCCAAA
R:
GGGGTCCAGTTGTTCCCATTC
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development