HsaALTA0009687-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000120784 | ZFP30
Description
zinc finger protein 30 homolog (mouse) [Source:HGNC Symbol;Acc:29555]
Coordinates
chr19:38134166-38135637:-
Coord C1 exon
chr19:38135511-38135637
Coord A exon
NA
Coord C2 exon
chr19:38134166-38134261
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TATTATTTATTTTTAAGCAGGAT
3' ss Score
5.86
Exon sequences
Seq C1 exon
GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG
Seq A exon
NA
Seq C2 exon
GATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGGGATGAGAAAAGAAGATGGACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAACTTGGTGTCACTGG
R:
ATCCCTCACAACCATCCAGGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)