HsaALTA0009743-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:HGNC:12948]
Coordinates
chr19:53091413-53091720:-
Coord C1 exon
chr19:53091637-53091720
Coord A exon
chr19:53091498-53091553
Coord C2 exon
chr19:53091413-53091497
Length
56 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CACCGCCCCCTTTCCCCAAGTCC
3' ss Score
4.9
Exon sequences
Seq C1 exon
AAACGTTCCTGGATCCGAACACTGCCCCCTGACGACCTAGAGAGATCCCGGCTCCCAGCCCACTGAGTGGCTTCAGCCTCGCTG
Seq A exon
TCCCCCGCCCACTTCATCCCTCAGGCACCTCCCAACTCCTGGCCTCTCTGCACGAG
Seq C2 exon
GCGCCTGCCCCGGGCCCCGCCTACAGGGGACCCAGCTCTTCTTGCAGCCACTGGAAGCTGATCACCTGGAGTGAAGACCTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949-7-7,7-6,7-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCTGGATCCGAACACTG
R:
TTCCAGTGGCTGCAAGAAGAG
Band lengths:
137-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains