HsaALTA0009746-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000188629 | ZNF177

Description

zinc finger protein 177 [Source:HGNC Symbol;Acc:12966]

Coordinates

chr19:9490733-9491924:+

Coord C1 exon

chr19:9490733-9490815

Coord A exon

chr19:9491344-9491823

Coord C2 exon

chr19:9491824-9491924

Length

480 bp

Sequences

Splice sites

5' ss Seq

ACGGTAAGA

5' ss Score

10.65

3' ss Seq

ACTTACTCCCTTTTCAACAGGCA

3' ss Score

9.39

Exon sequences

Seq C1 exon

ACTGGGAAACTCAACTTAAACCAAAAGATACAATTGCTATGCAGAACATTCCTGGGGGAAAAACATCCAATGGCATAAACACG

Seq A exon

GCAGAAAATCAACCTGGTGAGCACTCCCTGGAGTGTAACCATTGTGGGAAATTCAGAAAGAACACTCGCTTTATTTGTACAAGATATTGCAAGGGAGAGAAATGCTATAAATATATAAAGTATAGCAAAGTCTTCAACCATCCCTCAACTCTTAGGAGTCATGTGAGCATTCACATTGGAGAGAAAACTCTTGAATTTACTGATTGTAGAAAAGCTTTCAATCAAGAGTCATCCCTCAGGAAACACTTAAGAACTCCCACAGGACAGAAGTTTCAGGAGTATGAGCAATGTGATATGTCCTTCAGCCTACACTCTTCCTGCTCAGTACGTGAGCAAATACCTACTGGAGAGAAAGGTGATGAATGCAGTGACTATGGCAAAATATCTCCCCTTAGTGTCCACACAAAAACTGGTAGTGTGGAGGAGGGTTTGGAATGTAATGAACATGAGAAAACTTTCACTGACCCTTTGTCCCTTCAG

Seq C2 exon

AACTGTGTCAGAACTCACTCTGGAGAGATGCCCTATGAATGCAGTGACTGTGGGAAAGCCTTCATTTTTCAGTCTTCCCTTAAGAAACACATGAGATCTCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000188629-7-9,7-8-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.524 A=NA C2=0.114

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=11.9),PF087906=zf-LYAR=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=12.4),PF0013017=C1_1=WD(100=29.0),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=11.9)

Main Inclusion Isoform:

ENSP00000415070