HsaALTA0009756-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000132010 | ZNF20
Description
zinc finger protein 20 [Source:HGNC Symbol;Acc:12992]
Coordinates
chr19:12246584-12248517:-
Coord C1 exon
chr19:12248473-12248517
Coord A exon
chr19:12246711-12246719
Coord C2 exon
chr19:12246584-12246710
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCCTCTTTTATATATGTGAGATG
3' ss Score
2.19
Exon sequences
Seq C1 exon
AACACAGAGTGGGGGGAACATCCAGGATGCACATTCAACCAGCAG
Seq A exon
ATGTTTCAG
Seq C2 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTCAGCTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCAGGAAACCTTCAAGAACCTGACCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132010-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACATCCAGGATGCACAT
R:
GAAGGATCCAGCAAAGCCCAC
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)