HsaALTA0009771-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:HGNC:13044]
Coordinates
chr8:144889966-144890403:-
Coord C1 exon
chr8:144890308-144890403
Coord A exon
NA
Coord C2 exon
chr8:144889966-144890059
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AGCAGCCCCTGTCGTTCCAGGCC
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCCCATAGGCTCCTTCAATTTCCGTGATCCTCGGAGTCCCCAGGAGACCAGGTGATGGCAGCAGCCAGACTCCTGCCAGTGCCGGCAGGACCCCAG
Seq A exon
NA
Seq C2 exon
GCCAAGCTGACCTTCGAGGATGTGGCTGTGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGTCTCTACAGAAATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150-9-15,9-14,9-13-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCTTCAATTTCCGTGA
R:
CATCCTCGAAGGTCAGCTTGG
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains