HsaALTA0009775-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9544369-9544911:-
Coord C1 exon
chr19:9544751-9544911
Coord A exon
NA
Coord C2 exon
chr19:9544369-9544459
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
ATTTTTTTTTTTTTTAGTAGAGA
3' ss Score
5.01
Exon sequences
Seq C1 exon
GCAATGCTAAGAAAAGAGTGATATGCAAGCTGAGACCAAAAATATGGTATGATTTAGCCATACTGAAGGGGAAGGAAATAAGAGCTGGGCAAAGCATTCTGTGAATTGGCTGACTCCACTTCTATGGTGAGAGAGAGGAGTGCATCAAAGATTACTCCCAG
Seq A exon
NA
Seq C2 exon
AGATGGTTTCAGCATGTTGGCCAGTCTGGTCTCAGACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAATGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGGCAAAGCATTCTG
R:
TGGCCAACATGCTGAAACCAT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)