HsaALTA0009776-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9529893-9530894:-
Coord C1 exon
chr19:9530741-9530894
Coord A exon
chr19:9529966-9529975
Coord C2 exon
chr19:9529893-9529965
Length
10 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTCTTTCTTTTCCATGAGGTC
3' ss Score
-2.69
Exon sequences
Seq C1 exon
GATACCGTTAACCCTGGATAAAGAGAATGGAGGTTACCTCTGTCCGTGTAGATTCCTAAGCTGTCCTGGAGTGATCCTTGGAGTAAAGGAAAGGTGCTTTGAAGCACATTCAGCCATCAGCCCTGTGGGATGGCAGCCACTGATTTGTCCTATG
Seq A exon
GTCTTTACAG
Seq C2 exon
GGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-6-8,6-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACATTCAGCCATCAGCC
R:
TCAGCCACCACCCTTTCTACT
Band lengths:
104-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)