HsaALTA0009780-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000162702 | ZNF281
Description
zinc finger protein 281 [Source:HGNC Symbol;Acc:13075]
Coordinates
chr1:200378689-200379184:-
Coord C1 exon
chr1:200379074-200379184
Coord A exon
NA
Coord C2 exon
chr1:200378689-200378847
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
CTCCTCCTTTCTTCAGCCAGGCC
3' ss Score
4.52
Exon sequences
Seq C1 exon
ACACTGCGCCGCGGCTGCGCAGTACACGGGAGGCTTTTAATTCCATTGTGGAGAGGACGGCGTTATTTTTATTAACTGGAGGCGACGGCGGCTGCGGCGGCGGCGGGACCC
Seq A exon
NA
Seq C2 exon
GCCTCCTCCGGGGTATGAAAATCGGCAGTGGGTTCCTGAGTGGCGGCGGAGGTACCGGCAGTAGCGGTGGTAGCGGCTCCGGCGGCGGTGGTAGTGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCAGGAGGGCAGAGATGGAACCCACCTTTCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162702-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF0136316=FYVE=WD(100=10.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAGGACGGCGTTATT
R:
AGGAACCCACTGCCGATTTTC
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)