HsaALTA0009783-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000187607 | ZNF286

Description

zinc finger protein 286A [Source:HGNC Symbol;Acc:13501]

Coordinates

chr17:15611469-15619804:+

Coord C1 exon

chr17:15611469-15611561

Coord A exon

chr17:15619314-15619372

Coord C2 exon

chr17:15619373-15619804

Length

59 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

3' ss Seq

TTAACTCTTACCTATTACAGAAC

3' ss Score

7.61

Exon sequences

Seq C1 exon

GGCTTCCAGTTTCCAAACCTGAGAGCTACAACTTGGAGAATGGAAAAGAACCATTGAAGCTTGAGAGAAAAGCCCCCAAAAGCAGCTATTCAG

Seq A exon

AACTGCCTTTTTGTTGAGCACAGAAAACGAAGGAAATTTGCATTTCCAATGTCTTTCAG

Seq C2 exon

ACATGGAGACTAGACCACAGAGCAAGGATTCAACTTCAGTGCAAGATTTTTCCAAAGCAGAATCATGCAAAGTTGCAATAATAGACAGACTGACACGGAATAGTGTCTATGACTCTAACTTGGAAGCAGCCCTTGAATGTGAAAATTGGTTAGAGAATCAGCAAGGAAATCAGGAGAGACATTTGAGAGAAATGTTCACTCACATGAATTCACTCTCTGAGGAAACAGACCATAAGCATGATGTATACTGGAAAAGCTTCAATCAGAAATCTGTCCTTATCACTGAAGACAGAGTTCCCAAAGGATCTTATGCCTTCCATACACTTGAAAAAAGCTTGAAACAAAAATCAAACTTAATGAAAAAGCAGAGAACTTATAAAGAGAAAAAACCTCATAAATGTAATGATTGTGGTGAACTCTTCACCTACCATT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000187607-4-9,4-8-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.506 A=NA C2=0.159

Domain overlap (PFAM):

C1:

PF108153=ComZ=PD(28.6=50.0),PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)

Main Inclusion Isoform:

ENSP00000379231