HsaALTA0009786-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000168661 | ZNF30
Description
zinc finger protein 30 [Source:HGNC Symbol;Acc:HGNC:13090]
Coordinates
chr19:34931843-34933723:+
Coord C1 exon
chr19:34931843-34931993
Coord A exon
NA
Coord C2 exon
chr19:34933628-34933723
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CATTCTTATCTCATAAGCAGGAC
3' ss Score
5.92
Exon sequences
Seq C1 exon
AAATATGTGGGTTTGCAGTATCACGGATCAGTGACATTTGAGGATGTGGCCATAGCCTTCTCCCAGCAGGAGTGGGAGAGTCTGGACTCTTCCCAGAGGGGCTTGTACAGAGATGTGATGTTGGAGAACTACAGGAACTTGGTGTCAATGG
Seq A exon
NA
Seq C2 exon
GACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAAGAGCCTGAAGTGACAGTGAGGAAAGATGGAAGAAGATGGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168661-5-6,5-5,5-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=80.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGGCTTGTACAGAGA
R:
TCCAATAAGGCGATCACATGTGG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains