HsaALTA0009786-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000168661 | ZNF30
Description
zinc finger protein 30 [Source:HGNC Symbol;Acc:13090]
Coordinates
chr19:35422747-35424627:+
Coord C1 exon
chr19:35422747-35422897
Coord A exon
chr19:35424529-35424531
Coord C2 exon
chr19:35424532-35424627
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTACATTCTTATCTCATAAGCAG
3' ss Score
0.56
Exon sequences
Seq C1 exon
AAATATGTGGGTTTGCAGTATCACGGATCAGTGACATTTGAGGATGTGGCCATAGCCTTCTCCCAGCAGGAGTGGGAGAGTCTGGACTCTTCCCAGAGGGGCTTGTACAGAGATGTGATGTTGGAGAACTACAGGAACTTGGTGTCAATGG
Seq A exon
CAG
Seq C2 exon
GACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAAGAGCCTGAAGTGACAGTGAGGAAAGATGGAAGAAGATGGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168661-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=80.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGGCTTGTACAGAGA
R:
TCCAATAAGGCGATCACATGTGG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)