HsaALTA0009792-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:15624]
Coordinates
chr19:14815866-14817028:+
Coord C1 exon
chr19:14815866-14815982
Coord A exon
NA
Coord C2 exon
chr19:14816983-14817028
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TCCAGTTCTGCTCCTGACAGGCA
3' ss Score
6.64
Exon sequences
Seq C1 exon
GGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCCTCCATAGAAGAGAGGGAGACACCATTGACTCGAGAGGACCGGCCAGCTCTCCAGGAGCCGCCTTGGTCTCTGGGATGCACG
Seq A exon
NA
Seq C2 exon
GCACCTGGGCTCCACCCTGGACACAGAGGCCAGAGGGATCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.634
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCTGAGGATGCAGCTG
R:
AGGGATCCCTCTGGCCTCT
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)