HsaALTA0009805-1/2 @ hg38
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr10:38094315-38095629:+
Coord C1 exon
chr10:38094315-38094415
Coord A exon
NA
Coord C2 exon
chr10:38095538-38095629
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TCGTTACTCGCTCGTTCTAGATG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGAGCGGCGCGAGGACTTGTGGGAGATGTAGTGTGCACTTTTCGGCCCCCGTCGCGGGAGCCGCTTCGGGCCTTCTGGGCATGTCTGCCATATGGCTCCAG
Seq A exon
NA
Seq C2 exon
ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283930-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGGACTTGTGGGAGAT
R:
CTTTCTCGCGGCTGTACCTCT
Band lengths:
186-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development