HsaALTA0009830-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000178187 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:21200]
Coordinates
chr5:178368224-178369825:+
Coord C1 exon
chr5:178368224-178368445
Coord A exon
NA
Coord C2 exon
chr5:178369689-178369825
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
CAGTTCTCTCCTAATAGCAGGTG
3' ss Score
4.06
Exon sequences
Seq C1 exon
ATTGTGTTCTGACTGCGATGTGGCGCTTGCGATCTCTCGCCGCCGGCAGAGGCTCCTCGAAGAGCGACACGGGGCTGACCAGGCACGGTGGTCAAAGCCGCAGAGGGAGAGCGGGAGCGGTCGTGAGGTCGTCTGGGGAGAAGGGCGGAGGCAAAGCCGAGGAGGTGCGGGTTGTGGTCCATTCTGGAGGACGCTGATCGAATGCCCCAAACTTCCCGGAAT
Seq A exon
NA
Seq C2 exon
GTGTGTGGACCCTTCTAGCCTGAGGAGTCCTGCAGGTGTGAAGCTCCACACCTGCCTCCATAGCACTTTGCCTGTCCCTAAGAGGGCTCATCGGAGAAGAAAGAATGGCTGTCAGCCACCTGCCAACCATGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178187-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAATGCCCCAAACTTCCC
R:
GGGACAGGCAAAGTGCTATGG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)