HsaALTA0009836-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247329189-247330081:-
Coord C1 exon
chr1:247329966-247330081
Coord A exon
chr1:247329569-247329615
Coord C2 exon
chr1:247329189-247329568
Length
47 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TGATTTCTGTTTGGAAATAGGGT
3' ss Score
6.78
Exon sequences
Seq C1 exon
CTCCATTTGTAAAGGTCTTAATAACAAGAACAGTGACTTCGGCTCCGGAGCTTCAAGATAGTGGCCTGCTTGGCCTGCCCATCTCGGATCTCTCCAGGAGGACCCAGCCACCCAAG
Seq A exon
GGTCGTCTTCTGCTGCTGACCCCCATCAAATCCCATCATGCCCACAG
Seq C2 exon
CCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-5-9,5-8,5-7,5-6-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.394
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTCAAGATAGTGGCC
R:
GTGGGCTCCTCATTTTCCTGG
Band lengths:
134-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains