Special

HsaALTA0009849-2/3 @ hg38

Alternative 3'ss

Gene
ENSG00000130544 | ZNF557
Description
zinc finger protein 557 [Source:HGNC Symbol;Acc:HGNC:28632]
Coordinates
chr19:7074996-7075743:+
Coord C1 exon
chr19:7074996-7075105
Coord A exon
chr19:7075655-7075675
Coord C2 exon
chr19:7075676-7075743
Length
21 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACTCATTTCTCCTCCTCCAGCTC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGTGCTGTCCTGAGAGCGCTGCGGGATAAAGGAGGAGCGTCCTGCTTCCCGGCTGCCCTGTTGCTGTCGGAGTCACAGGATGGCGGCTGTCGTCCTGCCCCCAACTGCCG
Seq A exon
CTCTGTCTTCCCTGTTCCCAG
Seq C2 exon
CCTCTCAGCGAGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAGCTCCTGAAAAGCTGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130544-9-8,9-7,9-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.227 A=NA C2=0.302
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCTGTCGGAGTCACAG
R:
AGCTCATTAACCAGCTCTCCG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains