HsaALTA0009852-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9730108-9731908:-
Coord C1 exon
chr19:9731838-9731908
Coord A exon
NA
Coord C2 exon
chr19:9730108-9730205
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GATTGCCTCTATCCACCTAGATT
3' ss Score
6.55
Exon sequences
Seq C1 exon
CTTTTCCGGCGCTGGCTCCTCTCCGTCAGTGCGGTTTCGCCTTTATGGTGGTGGAGTCTGCCCAGGCTGTG
Seq A exon
NA
Seq C2 exon
ATTCATAAGCTGGCCTGAGGTGATCTTGGCATCAAGGAAGGGATGCACATCATCACACCATCAGCTTCAGAGAATGGCAGCCATTTATTTGTCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080087=Viral_cys_rich=PU(7.5=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCGCCTTTATGGTGGT
R:
CGGGACAAATAAATGGCTGCC
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)