HsaALTA0009872-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000187815 | ZNF642
Description
zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]
Coordinates
chr1:40942887-40945160:+
Coord C1 exon
chr1:40942887-40943566
Coord A exon
NA
Coord C2 exon
chr1:40945005-40945160
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTGGCAATTTCCTCACCAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
CCGGGAGGGCGCGGCCGGAGGCAGAGGCCAGGCGAGACACCCGGCTGCGGCCTAAGAGGCCAGGCTGGGTGGGCTTGGCTGCAGCCGCCAGCCCCGTGTTAAAGCGGCAGCCAGGGAGGTGTATCCTCCCCGGGGTCTGCAAGACGCCGGCTCAGGGCATCCCTCCCATTCCGGCCCTCAAAGCCTCGCTCCTGGGGGCGCTGCTGGGAAAGCCCACCCGCCTGGGCGGGCCCTTGATGGGAATGTGGAGCAGACCCTCGTCCACTCCGGAGGCCGAGGGTCCTCCGGGCTTCCGAAGGAAGCCGACCTCAACGCTGGACGCTTCTTGGAGAATGATTGCGTTGAGTGGAGATGTGGTCTGTCTATAAAAGGCCGGGAGGGAACAATATCTGTTACCACTCAGTCCGTCTCTAAAGAGACACTCTTTACCGCTGAAAACCTCAAGAGTGAGCACTCCCACGCCCCCGTCTCTGGTCCTACCTGGGTCCAAGGCCGATGTG
Seq A exon
NA
Seq C2 exon
AAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-0-3,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(91.3=97.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAATGTGGAGCAGACC
R:
TGATGCCTGCCTTACTGGACT
Band lengths:
295-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)