HsaALTA0009874-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000187801 | ZNF643
Description
zinc finger protein 643 [Source:HGNC Symbol;Acc:28053]
Coordinates
chr1:40922617-40923050:+
Coord C1 exon
chr1:40922617-40922743
Coord A exon
NA
Coord C2 exon
chr1:40923016-40923050
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTTTCTTCCCCATAAGCAGGAT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG
Seq A exon
NA
Seq C2 exon
GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187801-3-7,3-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCACCGGAATCTGTACC
R:
CTGGGAAATCACGCCAGGTTT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)