HsaALTA0009877-1/2 @ hg38
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr7:99560533-99600285:+
Coord C1 exon
chr7:99560533-99560695
Coord A exon
NA
Coord C2 exon
chr7:99600208-99600285
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGTGTCTCTCTCCCTAGCAGTTC
3' ss Score
8.29
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
NA
Seq C2 exon
TTCCAAGAGCCTCTGAGTTCCTGCCTTTTTTCATCTCTGAATCCCCACCATTGGCCTACATTGGGAGTGGGGCGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272647-3-29,3-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGAGTGTCTGTCCCCA
R:
GCAGGAACTCAGAGGCTCTTG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development