HsaALTA0009883-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000251192 | ZNF674
Description
zinc finger protein 674 [Source:HGNC Symbol;Acc:HGNC:17625]
Coordinates
chrX:46501232-46523618:-
Coord C1 exon
chrX:46522937-46523618
Coord A exon
NA
Coord C2 exon
chrX:46501232-46501332
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAATT
5' ss Score
5.8
3' ss Seq
ATTGCATTTTCTTCTAGAAGTCT
3' ss Score
0.49
Exon sequences
Seq C1 exon
ATCGCTTGAAACCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCTAGCTTGGGCAACAGAGTGAGACTTCATCTCAAAAAAATAAAGAAATAAAATAAAATAAAGTTTTTTTCATAAGATTTCCTTATTATTTTTTAATATTTGTAGGATCTGTAATGTTGTTCTCCTGATATTGATAATGTATGTTTTTTCTTGATCAGTCTGACTTAAGATTTATCCATTGTATTGATCTTTTCACAGAACCAGCTTTTGATTGTGTTTATTTTTGTGTTTTTCATTTTCTATTTCTTTGAGATAGAAAGAAATCCTTATTGATTACTATATCTTGCATACAGAAGAGCATTTAGAACACGTGCGTACTTTTCAGAAGAAATATATAGCTAACACCTGGATAATCACCACTCAGGTTGAGAACTACGACTCTACCCCTTCCAGATGGCATCCTCCTACCTCTCTCCTGGATGTAACCTGTATCCCAAATTCGGGG
Seq A exon
NA
Seq C2 exon
TCTGGGAAGTTGACGAGCAGATAGATCACTACAAGGAAAGCCAAGACAAATTTCTGTGGCAAGCTGCATTCATAGGCAAGGAAACACTGAAGGATGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251192-14-13,14-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTCTACCCCTTCCAGATG
R:
TCTGCTCGTCAACTTCCCAGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development