HsaALTA0009903-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:21948]
Coordinates
chr7:149172471-149174138:-
Coord C1 exon
chr7:149174013-149174138
Coord A exon
chr7:149172572-149172574
Coord C2 exon
chr7:149172471-149172571
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGTCTTTCTGTCTTTCTCAGCAG
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCCACCACCATCCCGCCCACCTCCTGGCAAACGGATCTCCCTCCCCACCATCCCTCTTCAGCATGCTCGGACGGGACCCTGAAGCTCAACACAGCAGCCTCCACGGAAG
Seq A exon
CAG
Seq C2 exon
ATGTAAAAATTGTAATAAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCCGTACATCCTACTGACCTAGAGGCTCACGGGACCCTGTTTGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF0009621=zf-C2H2=WD(100=6.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTCTTCAGCATGCTCG
R:
CCACCTCCTCTTCCTGGACTT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)