HsaALTA0009910-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000197054 | ZNF763
Description
zinc finger protein 763 [Source:HGNC Symbol;Acc:27614]
Coordinates
chr19:12075852-12087979:+
Coord C1 exon
chr19:12075852-12076026
Coord A exon
chr19:12087844-12087852
Coord C2 exon
chr19:12087853-12087979
Length
9 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
GCCTCCTCTACACATGTGAGATG
3' ss Score
-0.77
Exon sequences
Seq C1 exon
TTCCTGTCCTCACCTTTGTCCTTGCGCAGCCGGTGGTTGATATCCGCTGTATCCATCCCCGAGAGGGACCTGGTACCTCTACCCAGGTTTCTATCGCTCTGTCTCCTGCGCTGTGCCCTTCTGTAGTCACAGGAGCTGTAGAGAGGACCCCAGGACATCTGAAAGCCAGGAAATG
Seq A exon
ATGTTTCAG
Seq C2 exon
GACCCTGTGGCCTGTGAGGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCGCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197054-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGTAGAGAGGACCCCAG
R:
TATCCAGCAAAGCCCACTCCT
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)