HsaALTA0009920-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000197782 | ZNF780A
Description
zinc finger protein 780A [Source:HGNC Symbol;Acc:27603]
Coordinates
chr19:40587726-40589144:-
Coord C1 exon
chr19:40589018-40589144
Coord A exon
chr19:40587822-40587824
Coord C2 exon
chr19:40587726-40587821
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CATGTGTCGTTTCTTTTAAGCAG
3' ss Score
6.65
Exon sequences
Seq C1 exon
GGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGCAGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATCTCACTGG
Seq A exon
CAG
Seq C2 exon
GAAGTTCCATTTCTAAACCAGATGTAATTACGTTACTAGAGCAAGAGAAAGAGCCCTGGATGGTTGTAAGGAAAGAAACAAGCAGACGGTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197782-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAACTACAGCCACCTGA
R:
TCCTTACAACCATCCAGGGCT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)