HsaALTA0009922-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000196597 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:33110]
Coordinates
chr9:99615265-99616770:-
Coord C1 exon
chr9:99616370-99616770
Coord A exon
chr9:99615297-99615351
Coord C2 exon
chr9:99615265-99615296
Length
55 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TTGTTCTCCACTCTTTACAGATG
3' ss Score
10.57
Exon sequences
Seq C1 exon
TCGAGACTCCCGGGAAGCGGTTTGGGAAGCTCGGGGGTCGGCTCGGAAAGTAGAGGGGGCGCAGCTGGGGCGGGAGGACAGCGTTTGTGCCCGGAAGCGGGAGAGGAAGCGGGAAGTTTGTGGGATCCCCGCCCCCTGTGTCAGTGGATGCGACCGGGCGGGCCCTCGGCCTTCCCGGCCGCTGGAGAGGGACTTCGGCCGCTGGCTCCCGGGGCGGCTGAGGCTGAGCGTTGGTCCGGAGCAGGTGCCGGGTGCGGGCCGCGGTGTGCGGGACCGGAGCCCGGCGCGAGCGGCGGCGGGGGTGGGGAAAGCGCATTTGTAACGCGGGCGACAACGTGCCCGAAATCCCCGGACGGTGGGTCTGCATCGAGACCCCGAGCTCTGGAGCTGGAAAAACCCGG
Seq A exon
ATGCCATACTGCTGTTAACATATGTGACACTGGAGACTTTGTCCCTACCTCATAG
Seq C2 exon
AATCCCATGCATGATGATACATGAAGGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196597-3-7,3-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGAAAGCGCATTTGTA
R:
AAACCCTTCATGTATCATCATGCA
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)