HsaALTA1000347-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000005175 | RPAP3
Description
RNA polymerase II associated protein 3 [Source:HGNC Symbol;Acc:HGNC:26151]
Coordinates
chr12:47700015-47701604:-
Coord C1 exon
chr12:47701464-47701604
Coord A exon
chr12:47700165-47700293
Coord C2 exon
chr12:47700015-47700164
Length
129 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTCTCCCCTCTACTCCCAGAGG
3' ss Score
9.68
Exon sequences
Seq C1 exon
AATTTACCTCCTATTCGAAATGGGAATTTTAGGAAAAAGAAGAAAGGCAAAGCTAAAGAGTCTTCCAAAAAAACCAGAGAGGAAAACACAAAAAACAGGATAAAATCTTATGATTATGAGGCATGGGCAAAACTTGATGTG
Seq A exon
AGGTAACCACTGTCTGATTTCTCTGTTTATTATTTTCTTTGCATTTTTCTGTTTAACATTTTTACTGAGGTATAATGTGCATCAAGTCCAAAAATCTTAAGTGTGCATCTTCCTGAATTTTTACTCAAG
Seq C2 exon
TGTACACCTGTGAAACCACTGTTTGGATCAAGATACAGAACATTCTGGGAGGCTGAGGCACGAGAATGGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCACACCACTGCACTGCAGCCTGGGCCACAGAGGGAGACTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005175-4-9,4-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAAGCTAAAGAGTCTTCCA
R:
GAGTCTCCCTCTGTGGCCC
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains