HsaALTA1000519-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47820204-47821770:-
Coord C1 exon
chr17:47821666-47821770
Coord A exon
NA
Coord C2 exon
chr17:47820204-47820299
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTGCTCTACATCCCCAGCAGGGA
3' ss Score
5.08
Exon sequences
Seq C1 exon
TGCCACTGCTCAGCGCGGTGAGGAGGGAGCCGGTGACTCGGAGACGGTGACTCAGAGGCAGAGCGGCGCAAGGGCCAAGGAGTACTGGCGTCCATGGACCCTGGG
Seq A exon
NA
Seq C2 exon
GGAGTGGCCTCTCCCTTCTCCATGGACTTCCAAGAGAGGGACCCGCCCTTCCTGCCTGAGAGCGCTCAGTCCTCAAAGCCCAGCAGTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-0-4,0-3,0-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGTACTGGCGTCCATG
R:
CTTTGAGGACTGAGCGCTCTC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains