HsaALTA1000521-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47814521-47815352:-
Coord C1 exon
chr17:47815215-47815352
Coord A exon
chr17:47814615-47814707
Coord C2 exon
chr17:47814521-47814614
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTTCCCCTTCCCACCAAAGGGC
3' ss Score
7.51
Exon sequences
Seq C1 exon
CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTCCCACACGGAGTTCTTCGATGCCTGCGAGGTTCTCCTCTCCGCCAGCTCTTCTGAGAATGAG
Seq A exon
GGCTAGTTGGGCAGATTCTTGCCAGGCCCTGGGCACTGCCCAGCTGCCCGGGGGAGGCCCAGTCTGCCCGGCCTGTCATCTGTCCTGGCCCAG
Seq C2 exon
GGCTCAGAGGAGGAGGAGTCCTGTACCAGTGAAATCACCACCAGCCTGTCTGAGGAGATGCTGGACCTCAGGGGAGCTGAGCGCTGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-25-22,25-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTATCGCAGACCAGCATC
R:
AGGTCCAGCATCTCCTCAGAC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains