HsaALTA1001178-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr3:52517881-52518359:+
Coord C1 exon
chr3:52517881-52518003
Coord A exon
chr3:52518230-52518314
Coord C2 exon
chr3:52518315-52518359
Length
85 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
CTCATGTCTGCCTTGGCTAGACC
3' ss Score
5.01
Exon sequences
Seq C1 exon
AACAATGGAGGATGCAGCCCATATGCCACCTGCAAAAGCACAGGGGATGGCCAGAGGACATGTACCTGCGACACAGCCCACACCGTGGGGGACGGCCTCACCTGCCGTGCCCGAGTCGGCCTG
Seq A exon
ACCTTGGGCCGCAGGTGCTGGGACAGGCACCAGGCCCTGAATGGGGGCCGCCCCAAATCTGAGCTGACCCTCGCCCCCCCAGGAG
Seq C2 exon
CTCCTGAGGGATAAGCATGCCTCATTCTTCAGCCTCCGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327-67-83,67-82,67-81-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(89.5=82.9)
A:
NA
C2:
PF0246917=Fasciclin=PU(6.1=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGAGGATGCAGCCCATA
R:
CGGAGGCTGAAGAATGAGGC
Band lengths:
159-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains