HsaALTA1002574-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13716487-13717520:-
Coord C1 exon
chr5:13717315-13717520
Coord A exon
chr5:13716691-13716809
Coord C2 exon
chr5:13716487-13716690
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTGCACTTTCTCTTTGCAGTAC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTGTCAGCCAAGACCTGCTGGACGTGAGCTCTGGGTCCCAGTGGAAGCCCATGCTGTACGCAGTGGCTTTCCTGCACTCCACTGTCCAGGAGAGGCGCAAGTTCGGTGCCCTGGGGTGGAATATCCCCTACGAATTTAACCAAGCGGACTTTAATGCCACTGTGCAGTTCATCCAAAACCACTTGGATGACATGGATGTCAAAAAG
Seq A exon
TACTGATGAAGAGTGACTGACTGAATGATGTTGAAAGTGAATACATGGGTGTGACTTGGCAGGGAAATAATAATGCAACGGTAGTCAGTTCTACATAATTATTCTATAAAATTTCCCAG
Seq C2 exon
GGTGTCTCCTGGACCACCATCCGCTACATGATAGGAGAGATTCAATATGGAGGCAGAGTCACTGACGACTATGATAAGAGATTGTTGAACACATTTGCTAAGGTTTGGTTCAGTGAAAATATGTTTGGACCAGATTTCAGTTTTTACCAAGGATACAATATTCCAAAATGCAGCACAGTGGATAACTATCTTCAGTATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-102-101,102-100-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGCGGACTTTAATGCCA
R:
TCCACTGTGCTGCATTTTGGA
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains