HsaALTA1003199-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4 member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr12:51440708-51451022:+
Coord C1 exon
chr12:51440708-51440789
Coord A exon
chr12:51450642-51450875
Coord C2 exon
chr12:51450876-51451022
Length
234 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATCACATTATTTCTTTCAGTCT
3' ss Score
5.58
Exon sequences
Seq C1 exon
AGACCAGATGAAGAAGCTGTGGTGGATCAGGGTGGGACCAGTACAATTCTCAACATTCACTATGAAAAAGAAGAGCTGGAAG
Seq A exon
TCTTCACAAGATCCCTGTGAAGTTTGCAGGCATGTGCAGGACAAAGGAAGAGACCTTCAACTCCAAAATCTCTATATCTTTACTCCTGGAAGTCTTTGAAGTTTTGTTGTTCCAGAGCTGTGACCAGACCAAAGAACTGTGATATTTTTTTCTCTTAACTATGCTAGGCTTTTTGTTGTTGTTGTTTTTTAAAACTAAAGGAGTTCTCTCCACAGACCTTCTGCTTCTTTCCAG
Seq C2 exon
GTCACAGAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAGAGCCATCGGCATCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGGCGGGGCAAAGGAGCCAGCCAGGGGGAGGAAGGCCTGGAAGCCCTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-9-24,9-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGATGAAGAAGCTGTGG
R:
GTGGGCCAGGGCTTCCAG
Band lengths:
228-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains