HsaALTA1003608-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130246859-130260465:-
Coord C1 exon
chrX:130260419-130260465
Coord A exon
NA
Coord C2 exon
chrX:130246859-130247005
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTCTTCTCTTGAAAATTAGACA
3' ss Score
4.17
Exon sequences
Seq C1 exon
GTGACCTTGCAACTTCATGGATGACGACAAACCTTTTCAACCAAAAA
Seq A exon
NA
Seq C2 exon
ACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-4-6,4-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138361=DUF4195=PU(14.3=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTTCATGGATGACGACA
R:
TCTGCCATGGCTCTAGCTCTT
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains