HsaALTA1005067-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000069702 | TGFBR3
Description
transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr1:91698089-91708783:-
Coord C1 exon
chr1:91708663-91708783
Coord A exon
NA
Coord C2 exon
chr1:91698089-91698124
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TGTTTTTGTTTCAGAAAAAGGTC
3' ss Score
-0.71
Exon sequences
Seq C1 exon
TGTGTGCCTCCTGACGAAGCCTGCACCTCGCTGGACGCCTCGATAATCTGGGCCATGATGCAGAATAAGAAGACGTTCACTAAGCCCCTTGCTGTGATCCACCATGAAGCAGAATCTAAAG
Seq A exon
NA
Seq C2 exon
GTCCAAGCATGAAGGAACCAAATCCAATTTCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000069702-115-53,115-52-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(1.1=7.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGATAATCTGGGCCATG
R:
TTGGTTCCTTCATGCTTGGAC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains