HsaALTA1005398-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000071537 | SEL1L
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr14:81504263-81506241:-
Coord C1 exon
chr14:81506074-81506241
Coord A exon
chr14:81504301-81504306
Coord C2 exon
chr14:81504263-81504300
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATCTGACGTTTTGTTTTTAGCTG
3' ss Score
8.27
Exon sequences
Seq C1 exon
CTTTGACCGCCATTGAAGGCACAGCACATGGGGAGCCCTGCCACTTCCCTTTTCTTTTCCTAGATAAGGAGTATGATGAATGTACATCAGATGGGAGGGAAGATGGCAGACTGTGGTGTGCTACAACCTATGACTACAAAGCAGATGAAAAGTGGGGCTTTTGTGAAA
Seq A exon
CTGAAG
Seq C2 exon
AAGAGGCTGCTAAGAGACGGCAGATGCAGGAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF0004014=fn2=PD(94.3=91.7)
A:
NA
C2:
PF082387=Sel1=PU(61.1=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGGCAGACTGTGGTG
R:
TCCTGCATCTGCCGTCTCTTA
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains