HsaALTA1005854-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:121528677-121530325:-
Coord C1 exon
chr2:121530247-121530325
Coord A exon
NA
Coord C2 exon
chr2:121528677-121528780
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTCCATTTTGATTTTCAGTGC
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTGGTTCTGCTGGGCATGGACATCCTGTCCGCCCTGGTGACCCGGCTGCAGGATCGGTTCAAGGCGCAGATCGGCACAG
Seq A exon
NA
Seq C2 exon
TGCTGCCAAGTCTAATAGACAGACTAGGAGATGCTAAAGACTCTGTGAGGGAGCAGGACCAAACTCTGCTGCTAAAGATCATGGATCAAGCTGCTAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-28-23,28-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127832=Sec7_N=FE(24.8=100),PF123483=CLASP_N=FE(15.1=100)
A:
NA
C2:
PF127832=Sec7_N=FE(32.4=100),PF123483=CLASP_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGATCGGTTCAAGGC
R:
CAGCAGAGTTTGGTCCTGCTC
Band lengths:
105-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains