HsaALTA1006069-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71331728-71348838:+
Coord C1 exon
chr2:71331728-71331865
Coord A exon
NA
Coord C2 exon
chr2:71348753-71348838
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
ATTTGTGTTTTAACTTTCAGCTT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGGAGCCTACGAGGGCTCGCAGGAGCTGGGAGGCGCGCATGCGTGCAGCTCTTTGGAGGCGGTAGCGTTTTCGGCGTCGAGACTGGAGGCTGAGTGCTAAACTGTGTGGGGCGCGGATGGGATCCAGCTGTTAGTCGG
Seq A exon
NA
Seq C2 exon
CTTTGTGTTATTCTTGGAAAATTTCGCACCACTTGTGAATTCCTTGAACCTGGGCATTGCAAACCCACTTCTGTTGGGCCCATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-1-11,1-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.701
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTCTTTGGAGGCG
R:
GAGATGGGCCCAACAGAAGTG
Band lengths:
182-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains