HsaALTA1006376-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7611517-7613163:+
Coord C1 exon
chr19:7611517-7611586
Coord A exon
NA
Coord C2 exon
chr19:7611738-7613163
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCCCTTTGGCCTGGACAGCGA
3' ss Score
6.11
Exon sequences
Seq C1 exon
GCTCCCTGAAGTCTTCCCCGTCCATGTCCCATATGGAGGCCCTGGGCAAGGCCTGGAACCGGCAGCTCAG
Seq A exon
NA
Seq C2 exon
CGACGTGGATGTCGTCATGGGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCTGGGCCCCCCGCGTCCCGCGCCGGCCAGGACCCCCACCCAGCCACCCCCGGAGCCTGGTGACCTGCCCACCATCGAGGAAGCTCTGCAGATCATCCACAGTGCCGAGCCCCGGCTCCTCCCAGATGGGGCGGCCGACGGCAGCTTCTACCTCCACTCCCCTGAGGGGCCCTCCAAGCCATCCCTGGCCTCCCCCTACCTGCCCGAGGGGACCTCCAAACCACTGTCCGACAGGCCCACCAAAGCACCAGTGTACATGCCACACCCCGAGACCCCCTCGAAACCATCTCCCTGTCTGGTGGGGGAGGCATCGAAACCGCCAGCCCCATCCGAGGGGTCCCCGAAGGCGGTGGCTTCGTCCCCAGCAGCCACCAACTCCGAGGTGAAAATGACCAGCTTTGCAGAACGCAAGAAACAGCTGGTGAAGGCAGAGGCTGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-12-17,12-16,12-15-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTCTTCCCCGTCCATGT
R:
CTCACAGAGCGGAGGAGCA
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains