HsaALTA1007504-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000083838 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr19:58479930-58480619:+
Coord C1 exon
chr19:58479930-58480019
Coord A exon
chr19:58480176-58480328
Coord C2 exon
chr19:58480329-58480619
Length
153 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TGGTTTGCCCCTGCCCCCAGGAA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GGTTACCGCCCCACCAGCCAGAGGCACAGGCCCAGTCAGAGCTGGGGATGCTGCTCACGGGGACAGGCGTCTGCAGAAGCCTGCGCTCGG
Seq A exon
GAAATGAGAGTGAGGGTCCACCTGGCTGCCCAGAGGCCCAGCCGCCCCAGGGCCCAGGGCCGGCAGCCTGGGAGGGCTTGTCTGGGGCTGCCACTCCTGCCCCCACTGTGCGCCCAGGGACACCGCCAGTGCCCACTCAGCCCACACCTGCAG
Seq C2 exon
AGACGAGACTGGAGCCGGCTGCCACCCCCAGGAAGCCCTACACGTGCGAGCAGTGTGGCCGCGGCTTCGACTGGAAGTCAGTGTTCGTCATCCACCACCGGACACACACGAGTGGGCCAGGTGTGCAGTCCCCGGGGCTAGCCACCGGGGAAAGCACAGAGAAGCCACCACAAGGGGAGGTGGCCTTTCCGCACCACCCCCGACGCTCACTCACAGGCCCCCGGAGTTACCCGTGTGAGGAGTGCGGGTGCAGCTTCAGCTGGAAGTCGCAGCTGGTCATCCACCGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083838-12-18,12-17,12-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.622
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=17.3),PF134651=zf-H2C2_2=WD(100=18.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAGCTGGGGATGCTG
R:
GAAAGGCCACCTCCCCTTGT
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains