HsaALTA1008828-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70142234-70142686:+
Coord C1 exon
chr16:70142234-70142389
Coord A exon
chr16:70142471-70142552
Coord C2 exon
chr16:70142553-70142686
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
ACATATTTTCAAATGCATAGGCT
3' ss Score
4.61
Exon sequences
Seq C1 exon
CTTTGATGTATGATCTGAAGGTTCCCCGCTGGGACTTCCAGACCGGTAGGCAGTTACGCACCTCTCCTCTCTACGACCGGCTGGATGCACAGGGAGCCAGGTGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCCCCCGACAAGG
Seq A exon
GCTAGAATGTGTTCACAGAAGAAAAAGAACCACGTGGACTACACTAAACTCTACAGGGCCTTGTGATTTTTCCATTCCGTAG
Seq C2 exon
ACCTCCTGGCATTGGAGCAGAGCAAGACTTTCTATAAGCCAGATTGGTTTGACATCGTGGAGTCTGAAGTCAAGTGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAAAGTTTGAGATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-33-37,33-36,33-35,33-34-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157116=GCV_T=PU(16.4=26.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCTGAAGGTTCCCCGCT
R:
AGTCTTGCTCTGCTCCAATGC
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains