HsaALTA1009064-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23416004-23416992:-
Coord C1 exon
chr14:23416868-23416992
Coord A exon
chr14:23416109-23416294
Coord C2 exon
chr14:23416004-23416108
Length
186 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
AGGCCTCCCTGGAGCACGAGGAG
3' ss Score
-13.57
Exon sequences
Seq C1 exon
AGGAGATCTCCGACTTGACTGAGCAGTTGGGTTCCAGCGGAAAGACTATCCATGAGCTGGAGAAGGTCCGAAAGCAGCTGGAGGCCGAGAAGATGGAGCTGCAGTCAGCCCTGGAGGAGGCCGAG
Seq A exon
GAGGGCAAGATCCTCCGGGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATCGAGCGGAAGCTGGCAGAGAAGGACGAGGAGATGGAACAGGCCAAGCGCAACCACCTGCGGGTGGTGGACTCGCTGCAGACCTCCCTGGACGCAGAGACACGCAGCCGCAACGAGGCCCTGAGGGTGAAGAAG
Seq C2 exon
AAGATGGAAGGAGACCTCAATGAGATGGAGATCCAGCTCAGCCACGCCAACCGCATGGCCGCCGAGGCCCAGAAGCAAGTCAAGAGCCTCCAGAGCTTGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-66-93,66-92,66-91,66-90-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.1=100),PF045827=Reo_sigmaC=PD(27.3=92.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTCCGACTTGACTGAGCA
R:
CTTCAACAAGCTCTGGAGGCT
Band lengths:
227-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains