HsaALTA1009404-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000095319 | NUP188
Description
nucleoporin 188 [Source:HGNC Symbol;Acc:HGNC:17859]
Coordinates
chr9:128987589-128988186:+
Coord C1 exon
chr9:128987589-128987717
Coord A exon
chr9:128987916-128988046
Coord C2 exon
chr9:128988047-128988186
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTACTCCTCCTCTCTCCTAGTTT
3' ss Score
8.7
Exon sequences
Seq C1 exon
TCATACTCCCAGCCTGCAGTTTCTCTGCATCTGCAGCCTGGCATACACAGAAGCAGGACAGACAGTTATCAATATCATGGGCATTGGCGTGGACACCATTGACATGGTGATGGCTGCTCAGCCTCGAAG
Seq A exon
TTTGGACTGGGGCCTCTAACAGAAGCTGTTGAACTCTGGGATTATTGTTGGAATCTAATTCATGAGAGCACATATATTGCGAATGAAGTCATACTGTCTGAATCATCTTTGGTTTCCATTTGGCACCCTAG
Seq C2 exon
TGATGGGGCAGAGGGCCAGGGGCAGGGCCAGCTGCTGATCAAGACAGTGAAACTGGCATTCTCCGTCACCAACAATGTTATTCGGCTGAAACCTCCTTCTAATGTGGTGTCCCCCCTGGAACAGGCTCTCTCACAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095319-34-46,34-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.7=100),PF118943=DUF3414=FE(8.7=100)
A:
NA
C2:
PF104874=Nup188=FE(5.1=100),PF118943=DUF3414=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACTCCCAGCCTGCAGTT
R:
GGGGGACACCACATTAGAAGG
Band lengths:
244-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains